Shimia gijangensis

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia gijangensis is a Gram-negative bacterium characterized by a single replicon in its genomic structure. The complete genome of Shimia gijangensis is cataloged under the accession number FQZQ00000000.1. This classification as a Gram-negative organism indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of this group of bacteria. The presence of a single replicon suggests a streamlined genomic organization, which can influence aspects of its physiology and replication. Such bacteria often exhibit unique metabolic pathways and ecological roles, which can be significant in various environments. Understanding the traits of Shimia gijangensis may provide insights into its ecological niche and potential applications in biotechnology or environmental microbiology. Further studies could explore its interactions within microbial communities and its role in biogeochemical cycles, thereby contributing to a broader understanding of microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia gijangensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudopelagicola gijangensis strain DSM 100564 genome assembly,

Gene Summary

Adenine Count

920331 bp

Thymine Count

925384 bp

Guanine Count

1137401 bp

Cytosine Count

1111454 bp

Genome Length

4094570 bp

Protein-coding Genes

3992 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uncharacterized protein, upf0262 familySAMN05444000_101284Not AvailablePositive298575 - 29905418186.7
protein-tyrosine-phosphataseSAMN05444000_101285Not AvailablePositive299138 - 29951514500.0
methionine aminopeptidase, type iSAMN05444000_101286Not AvailablePositive299586 - 30041930234.2
trap-type c4-dicarboxylate transport system, substrate-binding proteinSAMN05444000_101287Not AvailablePositive300718 - 30176437883.2
16s rrna (guanine966-n2)-methyltransferaseSAMN05444000_101288Not AvailableNegative301828 - 30238819806.8
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunitSAMN05444000_101289Not AvailableNegative302385 - 30359343075.3
thiol peroxidase (atypical 2-cys peroxiredoxin)SAMN05444000_101290Not AvailablePositive303681 - 30416917421.0
4a-hydroxytetrahydrobiopterin dehydrataseSAMN05444000_101291Not AvailableNegative304222 - 30451210920.0
hypothetical proteinSAMN05444000_101292Not AvailableNegative304509 - 30569644154.6
glycerophosphoryl diester phosphodiesteraseSAMN05444000_101293Not AvailableNegative305744 - 30650527488.7

Displaying genes 301 – 310 of 4053 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.