Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized protein, upf0262 family | SAMN05444000_101284 | Not Available | Positive | 298575 - 299054 | 18186.7 |
| protein-tyrosine-phosphatase | SAMN05444000_101285 | Not Available | Positive | 299138 - 299515 | 14500.0 |
| methionine aminopeptidase, type i | SAMN05444000_101286 | Not Available | Positive | 299586 - 300419 | 30234.2 |
| trap-type c4-dicarboxylate transport system, substrate-binding protein | SAMN05444000_101287 | Not Available | Positive | 300718 - 301764 | 37883.2 |
| 16s rrna (guanine966-n2)-methyltransferase | SAMN05444000_101288 | Not Available | Negative | 301828 - 302388 | 19806.8 |
| 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit | SAMN05444000_101289 | Not Available | Negative | 302385 - 303593 | 43075.3 |
| thiol peroxidase (atypical 2-cys peroxiredoxin) | SAMN05444000_101290 | Not Available | Positive | 303681 - 304169 | 17421.0 |
| 4a-hydroxytetrahydrobiopterin dehydratase | SAMN05444000_101291 | Not Available | Negative | 304222 - 304512 | 10920.0 |
| hypothetical protein | SAMN05444000_101292 | Not Available | Negative | 304509 - 305696 | 44154.6 |
| glycerophosphoryl diester phosphodiesterase | SAMN05444000_101293 | Not Available | Negative | 305744 - 306505 | 27488.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
