Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative peptidoglycan binding domain-containing protein | SAMN05444000_101274 | Not Available | Positive | 291317 - 291970 | 23096.5 |
| type i phosphodiesterase / nucleotide pyrophosphatase | SAMN05444000_101275 | Not Available | Positive | 292076 - 292906 | 30300.9 |
| response regulator receiver domain-containing protein | SAMN05444000_101276 | Not Available | Positive | 293279 - 293857 | 21792.4 |
| hypothetical protein | SAMN05444000_101277 | Not Available | Positive | 293844 - 294227 | 13876.8 |
| transglycosylase slt domain-containing protein | SAMN05444000_101278 | Not Available | Negative | 294289 - 294762 | 17932.7 |
| Trna-thr | Not Available | Not Available | Positive | 294966 - 295040 | Not Available |
| hypothetical protein | SAMN05444000_101280 | Not Available | Positive | 295129 - 295293 | 5993.12 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | SAMN05444000_101281 | Not Available | Positive | 295299 - 296564 | 44588.3 |
| protein of unknown function | SAMN05444000_101282 | Not Available | Positive | 296564 - 297046 | 17462.6 |
| histidinol dehydrogenase | SAMN05444000_101283 | Not Available | Positive | 297195 - 298496 | 45689.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
