Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN05444000_101264 | Not Available | Negative | 274799 - 275305 | 18122.4 |
| ion channel | SAMN05444000_101265 | Not Available | Negative | 275309 - 275683 | 13377.7 |
| iron(iii) transport system substrate-binding protein | SAMN05444000_101266 | Not Available | Positive | 275915 - 276937 | 36527.1 |
| 2,4-dihydroxyhept-2-enedioate aldolase | SAMN05444000_101267 | Not Available | Negative | 276950 - 277723 | 26930.2 |
| ca2+-binding protein, rtx toxin-related | SAMN05444000_101268 | Not Available | Negative | 277939 - 282252 | 146688.0 |
| dna adenine methylase | SAMN05444000_101269 | Not Available | Negative | 282858 - 283754 | 34054.8 |
| ompa family protein | SAMN05444000_101270 | Not Available | Positive | 283961 - 284647 | 24891.4 |
| caspase domain-containing protein | SAMN05444000_101271 | Not Available | Negative | 284651 - 285853 | 43824.4 |
| cdp-alcohol phosphatidyltransferase | SAMN05444000_101272 | Not Available | Positive | 285984 - 286685 | 25641.6 |
| chat domain-containing protein | SAMN05444000_101273 | Not Available | Positive | 286740 - 291320 | 165786.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
