Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phenylacetate-coa ligase | SAMN05444000_11624 | Not Available | Negative | 2788508 - 2789728 | 43079.4 |
| amino acid/amide abc transporter atp-binding protein 2, haat family | SAMN05444000_11625 | Not Available | Negative | 2789862 - 2790686 | 30500.6 |
| amino acid/amide abc transporter substrate-binding protein, haat family | SAMN05444000_11626 | Not Available | Negative | 2790758 - 2792038 | 45922.2 |
| amino acid/amide abc transporter membrane protein 2, haat family | SAMN05444000_11627 | Not Available | Negative | 2792119 - 2793195 | 39327.1 |
| amino acid/amide abc transporter membrane protein 1, haat family | SAMN05444000_11628 | Not Available | Negative | 2793272 - 2794300 | 36782.0 |
| amino acid/amide abc transporter atp-binding protein 1, haat family | SAMN05444000_11629 | Not Available | Negative | 2794342 - 2795157 | 30075.5 |
| long-chain acyl-coa synthetase | SAMN05444000_11630 | Not Available | Negative | 2795154 - 2797418 | 84800.8 |
| hypothetical protein | SAMN05444000_11631 | Not Available | Positive | 2797507 - 2799414 | 69536.3 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN05444000_11632 | Not Available | Positive | 2799419 - 2800123 | 25830.8 |
| mapeg family protein | SAMN05444000_11633 | Not Available | Positive | 2800218 - 2800616 | 14327.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
