Shimia gijangensis

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia gijangensis is a Gram-negative bacterium characterized by a single replicon in its genomic structure. The complete genome of Shimia gijangensis is cataloged under the accession number FQZQ00000000.1. This classification as a Gram-negative organism indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of this group of bacteria. The presence of a single replicon suggests a streamlined genomic organization, which can influence aspects of its physiology and replication. Such bacteria often exhibit unique metabolic pathways and ecological roles, which can be significant in various environments. Understanding the traits of Shimia gijangensis may provide insights into its ecological niche and potential applications in biotechnology or environmental microbiology. Further studies could explore its interactions within microbial communities and its role in biogeochemical cycles, thereby contributing to a broader understanding of microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia gijangensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudopelagicola gijangensis strain DSM 100564 genome assembly,

Gene Summary

Adenine Count

920331 bp

Thymine Count

925384 bp

Guanine Count

1137401 bp

Cytosine Count

1111454 bp

Genome Length

4094570 bp

Protein-coding Genes

3992 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSAMN05444000_1164Not AvailablePositive2769971 - 277063924966.2
hypothetical proteinSAMN05444000_1165Not AvailableNegative2770650 - 27708567441.9
sulfoxide reductase catalytic subunit yedySAMN05444000_1166Not AvailableNegative2770856 - 277176134139.9
glutamate synthase domain-containing protein 2SAMN05444000_1167Not AvailableNegative2771830 - 277333554776.5
uncharacterized conserved protein, duf302 familySAMN05444000_1168Not AvailablePositive2773450 - 277389015884.0
radical sam superfamily enzyme, moaa/nifb/pqqe/skfb familySAMN05444000_1169Not AvailablePositive2774172 - 277566555849.3
hypothetical proteinSAMN05444000_11610Not AvailablePositive2775665 - 27757663580.37
hypothetical proteinSAMN05444000_11611Not AvailablePositive2776138 - 277651813886.9
multidrug resistance efflux pumpSAMN05444000_11612Not AvailablePositive2776511 - 277770442675.6
atp-dependent clp protease atp-binding subunit clpbSAMN05444000_11613Not AvailableNegative2777815 - 278043095035.8

Displaying genes 2781 – 2790 of 4053 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.