Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| unspecific monooxygenase | SAMN05444000_115102 | Not Available | Positive | 2751675 - 2752865 | 44568.3 |
| hypothetical protein | SAMN05444000_115103 | Not Available | Positive | 2752924 - 2753325 | 14206.1 |
| transcriptional regulator, asnc family | SAMN05444000_115104 | Not Available | Negative | 2753344 - 2753820 | 17908.6 |
| uroporphyrinogen-iii c-methyltransferase | SAMN05444000_115105 | Not Available | Positive | 2753964 - 2755352 | 49036.9 |
| protein of unknown function | SAMN05444000_115106 | Not Available | Positive | 2755352 - 2755669 | 11344.2 |
| sulfite reductase (nadph) hemoprotein beta-component | SAMN05444000_115107 | Not Available | Positive | 2755706 - 2757373 | 61835.6 |
| phosphoadenylylsulfate reductase (thioredoxin) | SAMN05444000_115108 | Not Available | Positive | 2757363 - 2758124 | 28277.6 |
| protein of unknown function | SAMN05444000_115109 | Not Available | Positive | 2758121 - 2758540 | 15468.1 |
| ferredoxin--nadp+ reductase | SAMN05444000_115110 | Not Available | Positive | 2758643 - 2759500 | 32053.3 |
| adenylate cyclase, class 3 | SAMN05444000_115111 | Not Available | Positive | 2759694 - 2761505 | 65698.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
