Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| penicillin-binding protein 1a | SAMN05444000_11572 | Not Available | Negative | 2721167 - 2723722 | 93735.3 |
| n-acetylmuramoyl-l-alanine amidase | SAMN05444000_11573 | Not Available | Negative | 2723855 - 2725075 | 44256.7 |
| aspartate/methionine/tyrosine aminotransferase | SAMN05444000_11574 | Not Available | Negative | 2725135 - 2726286 | 41615.7 |
| putative zn-dependent protease, contains tpr repeats | SAMN05444000_11575 | Not Available | Positive | 2726309 - 2727673 | 49644.5 |
| protein-disulfide isomerase | SAMN05444000_11576 | Not Available | Positive | 2727687 - 2728433 | 27095.3 |
| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | SAMN05444000_11577 | Not Available | Negative | 2728546 - 2729664 | 39559.5 |
| protein rodz, contains xre-like hth and duf4115 domains | SAMN05444000_11578 | Not Available | Negative | 2729735 - 2730904 | 41295.9 |
| 5-aminolevulinate synthase | SAMN05444000_11579 | Not Available | Negative | 2731014 - 2732237 | 44526.0 |
| hypothetical protein | SAMN05444000_11580 | Not Available | Negative | 2732216 - 2732350 | 5316.49 |
| acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase | SAMN05444000_11581 | Not Available | Positive | 2732462 - 2733835 | 49909.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
