Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide/nickel transport system substrate-binding protein | SAMN05444000_11511 | Not Available | Negative | 2659585 - 2661213 | 60251.3 |
| glycerol-3-phosphate dehydrogenase | SAMN05444000_11512 | Not Available | Negative | 2661274 - 2662848 | 58817.9 |
| trimethylamine---corrinoid protein co-methyltransferase | SAMN05444000_11513 | Not Available | Negative | 2662848 - 2664371 | 55557.1 |
| lysr family transcriptional regulator, glycine cleavage system transcriptional activator | SAMN05444000_11514 | Not Available | Negative | 2664503 - 2665393 | 32832.0 |
| transposase inso and inactivated derivatives | SAMN05444000_11515 | Not Available | Negative | 2665827 - 2666708 | 33275.6 |
| transposase and inactivated derivatives | SAMN05444000_11517 | Not Available | Negative | 2666764 - 2667090 | 12289.8 |
| dctp deaminase | SAMN05444000_11518 | Not Available | Positive | 2667490 - 2668566 | 39080.5 |
| transcriptional regulator, asnc family | SAMN05444000_11519 | Not Available | Negative | 2668570 - 2669106 | 19473.3 |
| hypothetical protein | SAMN05444000_11520 | Not Available | Positive | 2669182 - 2669367 | 6516.01 |
| hypothetical protein | SAMN05444000_11521 | Not Available | Negative | 2669395 - 2669607 | 7972.84 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
