Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative restriction endonuclease | SAMN05444000_114113 | Not Available | Positive | 2641948 - 2642847 | 33749.2 |
| transposase | SAMN05444000_114114 | Not Available | Negative | 2642986 - 2644368 | 52525.4 |
| hypothetical protein | SAMN05444000_114115 | Not Available | Negative | 2644762 - 2645514 | 27063.1 |
| protein of unknown function | SAMN05444000_114116 | Not Available | Negative | 2645582 - 2645782 | 7262.18 |
| hypothetical protein | SAMN05444000_114117 | Not Available | Negative | 2645848 - 2646312 | 16525.8 |
| protein of unknown function | SAMN05444000_114118 | Not Available | Negative | 2646403 - 2647170 | 27709.7 |
| uncharacterized membrane protein yhah, duf805 family | SAMN05444000_114119 | Not Available | Positive | 2647358 - 2647870 | 18613.9 |
| hypothetical protein | SAMN05444000_114120 | Not Available | Positive | 2647949 - 2648722 | 28067.8 |
| hypothetical protein | SAMN05444000_114121 | Not Available | Positive | 2648835 - 2649131 | 9788.35 |
| hypothetical protein | SAMN05444000_114122 | Not Available | Positive | 2649500 - 2650542 | 38246.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
