Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted rna-binding protein, contains pua-like domain | SAMN05444000_114103 | Not Available | Negative | 2633340 - 2633753 | 15618.5 |
| hypothetical protein | SAMN05444000_114104 | Not Available | Negative | 2633753 - 2634025 | 9742.71 |
| glycerol-3-phosphate dehydrogenase (nad(p)+) | SAMN05444000_114105 | Not Available | Negative | 2634027 - 2634986 | 33382.6 |
| o-sialoglycoprotein endopeptidase | SAMN05444000_114106 | Not Available | Negative | 2634983 - 2636086 | 37907.9 |
| uroporphyrinogen-iii synthase | SAMN05444000_114107 | Not Available | Positive | 2636140 - 2636877 | 26021.5 |
| uncharacterized conserved protein | SAMN05444000_114108 | Not Available | Positive | 2636930 - 2638141 | 42011.4 |
| hemy protein | SAMN05444000_114109 | Not Available | Positive | 2638152 - 2639627 | 53344.6 |
| phage integrase family protein | SAMN05444000_114110 | Not Available | Negative | 2639758 - 2640852 | 41276.5 |
| transcriptional regulator, contains xre-family hth domain | SAMN05444000_114111 | Not Available | Positive | 2641220 - 2641642 | 15727.8 |
| hypothetical protein | SAMN05444000_114112 | Not Available | Positive | 2641647 - 2641943 | 10934.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
