Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pas fold | SAMN05444000_11493 | Not Available | Negative | 2624516 - 2626057 | 57109.8 |
| two-component system, sensor histidine kinase regb | SAMN05444000_11494 | Not Available | Negative | 2626125 - 2627522 | 51490.7 |
| protein sco1/2 | SAMN05444000_11495 | Not Available | Positive | 2627611 - 2628228 | 22625.0 |
| response regulator receiver protein | SAMN05444000_11496 | Not Available | Positive | 2628300 - 2628854 | 20419.5 |
| l-amino acid n-acyltransferase ynca | SAMN05444000_11497 | Not Available | Negative | 2628926 - 2629417 | 17806.9 |
| metal dependent phosphohydrolase | SAMN05444000_11498 | Not Available | Negative | 2629421 - 2630074 | 24089.1 |
| hypothetical protein | SAMN05444000_11499 | Not Available | Positive | 2630296 - 2630610 | 10847.8 |
| adenosylhomocysteinase | SAMN05444000_114100 | Not Available | Positive | 2630681 - 2632072 | 50778.7 |
| protein of unknown function | SAMN05444000_114101 | Not Available | Positive | 2632276 - 2632617 | 12675.2 |
| protein of unknown function | SAMN05444000_114102 | Not Available | Negative | 2632895 - 2633287 | 13729.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
