Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| septum formation protein | SAMN05444000_11473 | Not Available | Positive | 2604499 - 2605188 | 26126.4 |
| shikimate dehydrogenase | SAMN05444000_11474 | Not Available | Positive | 2605185 - 2606018 | 29610.5 |
| dephospho-coa kinase | SAMN05444000_11475 | Not Available | Positive | 2606015 - 2606608 | 21423.9 |
| dna polymerase-3 subunit epsilon | SAMN05444000_11476 | Not Available | Positive | 2606601 - 2607329 | 26685.6 |
| protein translocase subunit secb | SAMN05444000_11477 | Not Available | Negative | 2607358 - 2607846 | 18559.1 |
| upf0716 protein fxsa | SAMN05444000_11478 | Not Available | Negative | 2607907 - 2608404 | 17791.8 |
| predicted lipid-binding transport protein, tim44 family | SAMN05444000_11479 | Not Available | Positive | 2608507 - 2609169 | 23928.2 |
| membrane-bound lytic murein transglycosylase a | SAMN05444000_11480 | Not Available | Positive | 2609166 - 2610203 | 38580.0 |
| dna-nicking endonuclease, smr domain | SAMN05444000_11481 | Not Available | Positive | 2610200 - 2610778 | 21718.8 |
| esterase/lipase superfamily enzyme | SAMN05444000_11482 | Not Available | Negative | 2610775 - 2611881 | 41249.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
