Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xtp/ditp diphosphohydrolase | SAMN05444000_11463 | Not Available | Positive | 2594688 - 2595299 | 22171.2 |
| oxygen-independent coproporphyrinogen-3 oxidase | SAMN05444000_11464 | Not Available | Positive | 2595427 - 2596449 | 37858.8 |
| hypothetical protein | SAMN05444000_11465 | Not Available | Positive | 2596453 - 2596806 | 12972.6 |
| chromosome partitioning protein, parb family | SAMN05444000_11466 | Not Available | Negative | 2596796 - 2597689 | 32374.9 |
| chromosome partitioning protein | SAMN05444000_11467 | Not Available | Negative | 2597705 - 2598514 | 29472.1 |
| 16s rrna (guanine527-n7)-methyltransferase | SAMN05444000_11468 | Not Available | Negative | 2598507 - 2599133 | 23202.7 |
| trna uridine 5-carboxymethylaminomethyl modification enzyme | SAMN05444000_11469 | Not Available | Negative | 2599130 - 2600992 | 67764.5 |
| trna modification gtpase trme | SAMN05444000_11470 | Not Available | Negative | 2601005 - 2602303 | 46005.8 |
| transcription termination factor rho | SAMN05444000_11471 | Not Available | Negative | 2602314 - 2603609 | 47959.5 |
| putative membrane protein | SAMN05444000_11472 | Not Available | Negative | 2603732 - 2604181 | 17322.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
