Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide deformylase | SAMN05444000_101234 | Not Available | Positive | 250256 - 250777 | 19505.8 |
| peptide deformylase | SAMN05444000_101235 | Not Available | Positive | 250774 - 251271 | 18612.2 |
| peptide deformylase | SAMN05444000_101236 | Not Available | Positive | 251268 - 251762 | 18536.5 |
| methionyl-trna formyltransferase | SAMN05444000_101237 | Not Available | Positive | 251774 - 252664 | 31401.7 |
| hypothetical protein | SAMN05444000_101238 | Not Available | Positive | 252618 - 252911 | 10716.3 |
| ribonuclease hi | SAMN05444000_101239 | Not Available | Negative | 252928 - 253380 | 16584.7 |
| methyltransferase domain-containing protein | SAMN05444000_101240 | Not Available | Negative | 253373 - 253972 | 21474.2 |
| threonine/homoserine/homoserine lactone efflux protein | SAMN05444000_101241 | Not Available | Negative | 253969 - 254583 | 21439.0 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | SAMN05444000_101242 | Not Available | Negative | 254584 - 255543 | 34557.5 |
| cytochrome c | SAMN05444000_101243 | Not Available | Positive | 255688 - 256131 | 16237.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
