Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s rrna m(5)u-1939 methyltransferase | SAMN05444000_11443 | Not Available | Negative | 2572892 - 2574109 | 43590.2 |
| atp-binding cassette, subfamily b, multidrug efflux pump | SAMN05444000_11444 | Not Available | Negative | 2574151 - 2575992 | 67607.4 |
| threonine/homoserine/homoserine lactone efflux protein | SAMN05444000_11445 | Not Available | Negative | 2576164 - 2576757 | 21306.7 |
| poly(a) polymerase/trna nucleotidyltransferase (cca-adding enzyme) | SAMN05444000_11446 | Not Available | Negative | 2576759 - 2577922 | 41754.9 |
| 8-oxo-dgtp pyrophosphatase mutt, nudix family | SAMN05444000_11447 | Not Available | Negative | 2577919 - 2578518 | 21666.0 |
| molecular chaperone hsp33 | SAMN05444000_11448 | Not Available | Negative | 2578515 - 2579501 | 35680.2 |
| 8-oxo-dgtp diphosphatase | SAMN05444000_11449 | Not Available | Positive | 2579580 - 2580017 | 16143.4 |
| sigma-b regulation protein rsbu (phosphoserine phosphatase) | SAMN05444000_11450 | Not Available | Negative | 2580014 - 2581234 | 44340.8 |
| hpt domain-containing protein | SAMN05444000_11451 | Not Available | Positive | 2581458 - 2581778 | 11862.9 |
| argininosuccinate synthase | SAMN05444000_11452 | Not Available | Positive | 2581923 - 2583158 | 45667.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
