Shimia gijangensis

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia gijangensis is a Gram-negative bacterium characterized by a single replicon in its genomic structure. The complete genome of Shimia gijangensis is cataloged under the accession number FQZQ00000000.1. This classification as a Gram-negative organism indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of this group of bacteria. The presence of a single replicon suggests a streamlined genomic organization, which can influence aspects of its physiology and replication. Such bacteria often exhibit unique metabolic pathways and ecological roles, which can be significant in various environments. Understanding the traits of Shimia gijangensis may provide insights into its ecological niche and potential applications in biotechnology or environmental microbiology. Further studies could explore its interactions within microbial communities and its role in biogeochemical cycles, thereby contributing to a broader understanding of microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia gijangensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudopelagicola gijangensis strain DSM 100564 genome assembly,

Gene Summary

Adenine Count

920331 bp

Thymine Count

925384 bp

Guanine Count

1137401 bp

Cytosine Count

1111454 bp

Genome Length

4094570 bp

Protein-coding Genes

3992 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
23s rrna m(5)u-1939 methyltransferaseSAMN05444000_11443Not AvailableNegative2572892 - 257410943590.2
atp-binding cassette, subfamily b, multidrug efflux pumpSAMN05444000_11444Not AvailableNegative2574151 - 257599267607.4
threonine/homoserine/homoserine lactone efflux proteinSAMN05444000_11445Not AvailableNegative2576164 - 257675721306.7
poly(a) polymerase/trna nucleotidyltransferase (cca-adding enzyme)SAMN05444000_11446Not AvailableNegative2576759 - 257792241754.9
8-oxo-dgtp pyrophosphatase mutt, nudix familySAMN05444000_11447Not AvailableNegative2577919 - 257851821666.0
molecular chaperone hsp33SAMN05444000_11448Not AvailableNegative2578515 - 257950135680.2
8-oxo-dgtp diphosphataseSAMN05444000_11449Not AvailablePositive2579580 - 258001716143.4
sigma-b regulation protein rsbu (phosphoserine phosphatase)SAMN05444000_11450Not AvailableNegative2580014 - 258123444340.8
hpt domain-containing proteinSAMN05444000_11451Not AvailablePositive2581458 - 258177811862.9
argininosuccinate synthaseSAMN05444000_11452Not AvailablePositive2581923 - 258315845667.4

Displaying genes 2581 – 2590 of 4053 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.