Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, marr family | SAMN05444000_11433 | Not Available | Negative | 2566344 - 2566781 | 15842.2 |
| predicted amidohydrolase | SAMN05444000_11434 | Not Available | Negative | 2566781 - 2567611 | 29976.5 |
| glutaredoxin 3 | SAMN05444000_11435 | Not Available | Negative | 2567615 - 2567872 | 9340.31 |
| comf family protein | SAMN05444000_11436 | Not Available | Negative | 2567912 - 2568523 | 22433.6 |
| methyltransferase domain-containing protein | SAMN05444000_11437 | Not Available | Positive | 2568647 - 2569477 | 30488.9 |
| ferrochelatase | SAMN05444000_11438 | Not Available | Positive | 2569533 - 2570591 | 39843.1 |
| hypothetical protein | SAMN05444000_11439 | Not Available | Negative | 2570693 - 2570869 | 5683.98 |
| l,d-transpeptidase catalytic domain | SAMN05444000_11440 | Not Available | Negative | 2571016 - 2571612 | 22404.4 |
| cysteine-rich secretory protein family protein | SAMN05444000_11441 | Not Available | Positive | 2571781 - 2572305 | 18917.4 |
| l,d-transpeptidase catalytic domain | SAMN05444000_11442 | Not Available | Negative | 2572306 - 2572800 | 18401.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
