Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| molecular chaperone dnaj | SAMN05444000_11413 | Not Available | Positive | 2541064 - 2542218 | 40875.1 |
| amino acid abc transporter substrate-binding protein, paat family | SAMN05444000_11414 | Not Available | Negative | 2542272 - 2543111 | 30315.7 |
| dna repair protein radc | SAMN05444000_11415 | Not Available | Positive | 2543184 - 2544041 | 32065.4 |
| phosphate abc transporter substrate-binding protein, phot family | SAMN05444000_11416 | Not Available | Negative | 2544038 - 2545597 | 55864.5 |
| hypothetical protein | SAMN05444000_11417 | Not Available | Negative | 2545620 - 2546645 | 35876.2 |
| protein translocase subunit seca | SAMN05444000_11418 | Not Available | Negative | 2546741 - 2549437 | 100506.0 |
| peptidyl-prolyl cis-trans isomerase c | SAMN05444000_11419 | Not Available | Positive | 2549609 - 2550475 | 31368.4 |
| glutamate n-acetyltransferase | SAMN05444000_11420 | Not Available | Positive | 2550478 - 2551707 | 42915.0 |
| 8-oxo-dgtp diphosphatase | SAMN05444000_11421 | Not Available | Positive | 2551707 - 2552108 | 14935.2 |
| bacterial translation initiation factor 2 (bif-2) | SAMN05444000_11422 | Not Available | Negative | 2552489 - 2554984 | 89420.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
