Shimia gijangensis

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia gijangensis is a Gram-negative bacterium characterized by a single replicon in its genomic structure. The complete genome of Shimia gijangensis is cataloged under the accession number FQZQ00000000.1. This classification as a Gram-negative organism indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of this group of bacteria. The presence of a single replicon suggests a streamlined genomic organization, which can influence aspects of its physiology and replication. Such bacteria often exhibit unique metabolic pathways and ecological roles, which can be significant in various environments. Understanding the traits of Shimia gijangensis may provide insights into its ecological niche and potential applications in biotechnology or environmental microbiology. Further studies could explore its interactions within microbial communities and its role in biogeochemical cycles, thereby contributing to a broader understanding of microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia gijangensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudopelagicola gijangensis strain DSM 100564 genome assembly,

Gene Summary

Adenine Count

920331 bp

Thymine Count

925384 bp

Guanine Count

1137401 bp

Cytosine Count

1111454 bp

Genome Length

4094570 bp

Protein-coding Genes

3992 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dtdp-glucose 4,6-dehydrataseSAMN05444000_1143Not AvailableNegative2530747 - 253179638668.3
dtdp-4-dehydrorhamnose 3,5-epimeraseSAMN05444000_1144Not AvailableNegative2531793 - 253235920928.4
udp-glucuronate 4-epimeraseSAMN05444000_1145Not AvailableNegative2532819 - 253383837395.6
glycosyltransferase, gt2 familySAMN05444000_1146Not AvailableNegative2533866 - 253510745995.2
3-deoxy-manno-octulosonate cytidylyltransferase (cmp-kdo synthetase)SAMN05444000_1147Not AvailableNegative2535104 - 253590429150.4
3'(2'),5'-bisphosphate nucleotidaseSAMN05444000_1148Not AvailableNegative2535904 - 253670128859.9
abc-type polysaccharide/polyol phosphate export permeaseSAMN05444000_1149Not AvailablePositive2536819 - 253764030263.7
sh3 domain-containing proteinSAMN05444000_11410Not AvailablePositive2537637 - 253826623046.2
alkylated dna repair protein (dna oxidative demethylase)SAMN05444000_11411Not AvailableNegative2538263 - 253886822112.7
molecular chaperone dnakSAMN05444000_11412Not AvailablePositive2539076 - 254098668843.2

Displaying genes 2541 – 2550 of 4053 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.