Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dtdp-glucose 4,6-dehydratase | SAMN05444000_1143 | Not Available | Negative | 2530747 - 2531796 | 38668.3 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | SAMN05444000_1144 | Not Available | Negative | 2531793 - 2532359 | 20928.4 |
| udp-glucuronate 4-epimerase | SAMN05444000_1145 | Not Available | Negative | 2532819 - 2533838 | 37395.6 |
| glycosyltransferase, gt2 family | SAMN05444000_1146 | Not Available | Negative | 2533866 - 2535107 | 45995.2 |
| 3-deoxy-manno-octulosonate cytidylyltransferase (cmp-kdo synthetase) | SAMN05444000_1147 | Not Available | Negative | 2535104 - 2535904 | 29150.4 |
| 3'(2'),5'-bisphosphate nucleotidase | SAMN05444000_1148 | Not Available | Negative | 2535904 - 2536701 | 28859.9 |
| abc-type polysaccharide/polyol phosphate export permease | SAMN05444000_1149 | Not Available | Positive | 2536819 - 2537640 | 30263.7 |
| sh3 domain-containing protein | SAMN05444000_11410 | Not Available | Positive | 2537637 - 2538266 | 23046.2 |
| alkylated dna repair protein (dna oxidative demethylase) | SAMN05444000_11411 | Not Available | Negative | 2538263 - 2538868 | 22112.7 |
| molecular chaperone dnak | SAMN05444000_11412 | Not Available | Positive | 2539076 - 2540986 | 68843.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
