Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hpr(ser) kinase/phosphatase | SAMN05444000_113116 | Not Available | Negative | 2508333 - 2508797 | 16112.6 |
| two-component system, ompr family, sensor histidine kinase chvg | SAMN05444000_113117 | Not Available | Negative | 2508801 - 2510519 | 62135.2 |
| two component transcriptional regulator, winged helix family | SAMN05444000_113118 | Not Available | Negative | 2510528 - 2511229 | 26837.3 |
| phosphoenolpyruvate carboxykinase (atp) | SAMN05444000_113119 | Not Available | Positive | 2511593 - 2513191 | 58524.1 |
| anaerobic selenocysteine-containing dehydrogenase | SAMN05444000_113120 | Not Available | Negative | 2513260 - 2515347 | 75306.4 |
| acyl-coa dehydrogenase | SAMN05444000_113121 | Not Available | Negative | 2515372 - 2516472 | 38312.7 |
| acyl-coa dehydrogenase | SAMN05444000_113122 | Not Available | Negative | 2516477 - 2517655 | 43182.1 |
| amino acid/amide abc transporter substrate-binding protein, haat family | SAMN05444000_113123 | Not Available | Negative | 2517718 - 2518878 | 40988.0 |
| long-chain acyl-coa synthetase | SAMN05444000_113124 | Not Available | Negative | 2518920 - 2520803 | 69989.0 |
| amino acid/amide abc transporter atp-binding protein 2, haat family | SAMN05444000_113125 | Not Available | Negative | 2520809 - 2521582 | 28862.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
