Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp:cob(i)alamin adenosyltransferase | SAMN05444000_113106 | Not Available | Positive | 2500467 - 2501039 | 20748.5 |
| 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-coa isomerase | SAMN05444000_113107 | Not Available | Negative | 2501068 - 2501856 | 27990.7 |
| electron transfer flavoprotein beta subunit | SAMN05444000_113108 | Not Available | Positive | 2502144 - 2502902 | 26823.5 |
| electron transfer flavoprotein alpha subunit apoprotein | SAMN05444000_113109 | Not Available | Positive | 2502902 - 2503831 | 31175.8 |
| hypothetical protein | SAMN05444000_113110 | Not Available | Negative | 2503884 - 2504705 | 30637.3 |
| 3-hydroxyacyl-coa dehydrogenase | SAMN05444000_113111 | Not Available | Positive | 2504863 - 2505738 | 32045.9 |
| putative hemolysin | SAMN05444000_113112 | Not Available | Negative | 2505824 - 2506705 | 32951.9 |
| phosphocarrier protein | SAMN05444000_113113 | Not Available | Negative | 2506732 - 2507010 | 9333.22 |
| pts system, mannose-specific iia component | SAMN05444000_113114 | Not Available | Negative | 2507015 - 2507407 | 13938.7 |
| upf0042 nucleotide-binding protein | SAMN05444000_113115 | Not Available | Negative | 2507413 - 2508309 | 33249.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
