Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tolb amino-terminal domain-containing protein | SAMN05444000_11396 | Not Available | Positive | 2488006 - 2489895 | 69151.6 |
| elongation factor tu | SAMN05444000_11397 | Not Available | Negative | 2490253 - 2491428 | 42634.0 |
| hypothetical protein | SAMN05444000_11398 | Not Available | Negative | 2491540 - 2492160 | 22542.1 |
| cytochrome p450 | SAMN05444000_11399 | Not Available | Positive | 2492284 - 2493636 | 49830.2 |
| peptidase family m48 | SAMN05444000_113100 | Not Available | Negative | 2493706 - 2494830 | 40118.3 |
| uncharacterized membrane protein yjgn, duf898 family | SAMN05444000_113101 | Not Available | Negative | 2494827 - 2496068 | 46714.3 |
| dna topoisomerase iv subunit a | SAMN05444000_113102 | Not Available | Negative | 2496135 - 2498477 | 87533.2 |
| sh3 domain-containing protein | SAMN05444000_113103 | Not Available | Positive | 2498636 - 2499256 | 22199.6 |
| short-chain dehydrogenase | SAMN05444000_113104 | Not Available | Positive | 2499346 - 2500179 | 30780.8 |
| hypoxia induced protein conserved region | SAMN05444000_113105 | Not Available | Positive | 2500244 - 2500462 | 7797.81 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
