Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ssu ribosomal protein s12p | SAMN05444000_11376 | Not Available | Negative | 2464605 - 2464976 | 14180.5 |
| s-adenosylmethionine uptake transporter | SAMN05444000_11377 | Not Available | Negative | 2465243 - 2466121 | 31655.9 |
| dna-directed rna polymerase subunit beta' | SAMN05444000_11378 | Not Available | Negative | 2466272 - 2470519 | 156890.0 |
| dna-directed rna polymerase subunit beta | SAMN05444000_11379 | Not Available | Negative | 2470575 - 2474717 | 153846.0 |
| lsu ribosomal protein l12p | SAMN05444000_11380 | Not Available | Negative | 2474952 - 2475332 | 12849.4 |
| lsu ribosomal protein l10p | SAMN05444000_11381 | Not Available | Negative | 2475405 - 2475923 | 17734.2 |
| hint domain-containing protein | SAMN05444000_11382 | Not Available | Negative | 2476222 - 2478264 | 71752.1 |
| lsu ribosomal protein l1p | SAMN05444000_11383 | Not Available | Negative | 2478545 - 2479243 | 23972.2 |
| lsu ribosomal protein l11p | SAMN05444000_11384 | Not Available | Negative | 2479243 - 2479668 | 14981.3 |
| transcription antitermination protein nusg | SAMN05444000_11385 | Not Available | Negative | 2479792 - 2480382 | 22192.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
