Shimia gijangensis

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia gijangensis is a Gram-negative bacterium characterized by a single replicon in its genomic structure. The complete genome of Shimia gijangensis is cataloged under the accession number FQZQ00000000.1. This classification as a Gram-negative organism indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of this group of bacteria. The presence of a single replicon suggests a streamlined genomic organization, which can influence aspects of its physiology and replication. Such bacteria often exhibit unique metabolic pathways and ecological roles, which can be significant in various environments. Understanding the traits of Shimia gijangensis may provide insights into its ecological niche and potential applications in biotechnology or environmental microbiology. Further studies could explore its interactions within microbial communities and its role in biogeochemical cycles, thereby contributing to a broader understanding of microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia gijangensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudopelagicola gijangensis strain DSM 100564 genome assembly,

Gene Summary

Adenine Count

920331 bp

Thymine Count

925384 bp

Guanine Count

1137401 bp

Cytosine Count

1111454 bp

Genome Length

4094570 bp

Protein-coding Genes

3992 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uncharacterized membrane protein ydjx, tvp38/tmem64 family, snare-associated domainSAMN05444000_1135Not AvailableNegative2410073 - 241076224206.5
lsu ribosomal protein l34pSAMN05444000_1136Not AvailablePositive2411095 - 24112295150.41
ribonuclease p protein componentSAMN05444000_1137Not AvailablePositive2411256 - 241167815489.9
uncharacterized conserved proteinSAMN05444000_1138Not AvailablePositive2411700 - 241221818781.9
putative membrane protein insertion efficiency factorSAMN05444000_1139Not AvailablePositive2412181 - 241261215297.6
hypothetical proteinSAMN05444000_11310Not AvailablePositive2412563 - 241321023210.1
trna 2-thiocytidine biosynthesis protein ttcaSAMN05444000_11311Not AvailablePositive2413300 - 241419334016.3
diguanylate cyclase/phosphodiesteraseSAMN05444000_11312Not AvailablePositive2414240 - 241578457120.1
protein translocase subunit yidcSAMN05444000_11313Not AvailablePositive2415895 - 241770966304.6
hypothetical proteinSAMN05444000_11314Not AvailablePositive2417706 - 241844926856.7

Displaying genes 2411 – 2420 of 4053 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.