Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized membrane protein ydjx, tvp38/tmem64 family, snare-associated domain | SAMN05444000_1135 | Not Available | Negative | 2410073 - 2410762 | 24206.5 |
| lsu ribosomal protein l34p | SAMN05444000_1136 | Not Available | Positive | 2411095 - 2411229 | 5150.41 |
| ribonuclease p protein component | SAMN05444000_1137 | Not Available | Positive | 2411256 - 2411678 | 15489.9 |
| uncharacterized conserved protein | SAMN05444000_1138 | Not Available | Positive | 2411700 - 2412218 | 18781.9 |
| putative membrane protein insertion efficiency factor | SAMN05444000_1139 | Not Available | Positive | 2412181 - 2412612 | 15297.6 |
| hypothetical protein | SAMN05444000_11310 | Not Available | Positive | 2412563 - 2413210 | 23210.1 |
| trna 2-thiocytidine biosynthesis protein ttca | SAMN05444000_11311 | Not Available | Positive | 2413300 - 2414193 | 34016.3 |
| diguanylate cyclase/phosphodiesterase | SAMN05444000_11312 | Not Available | Positive | 2414240 - 2415784 | 57120.1 |
| protein translocase subunit yidc | SAMN05444000_11313 | Not Available | Positive | 2415895 - 2417709 | 66304.6 |
| hypothetical protein | SAMN05444000_11314 | Not Available | Positive | 2417706 - 2418449 | 26856.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
