Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ig-like domain (group 3) | SAMN05444000_112124 | Not Available | Negative | 2396530 - 2398467 | 65403.8 |
| 4-methylaminobutanoate oxidase (formaldehyde-forming) | SAMN05444000_112125 | Not Available | Negative | 2398874 - 2401333 | 90345.8 |
| transcriptional regulator, tetr family | SAMN05444000_112126 | Not Available | Positive | 2401435 - 2402064 | 23444.4 |
| hypothetical protein | SAMN05444000_112127 | Not Available | Negative | 2402070 - 2403131 | 36671.2 |
| uncharacterized membrane protein | SAMN05444000_112128 | Not Available | Negative | 2403369 - 2404598 | 45931.8 |
| transcriptional regulator, lysr family | SAMN05444000_112129 | Not Available | Positive | 2404703 - 2405617 | 34047.8 |
| site-specific recombinase xerd | SAMN05444000_1131 | Not Available | Negative | 2405870 - 2407048 | 43788.0 |
| Trna-arg | Not Available | Not Available | Positive | 2407110 - 2407186 | Not Available |
| signal transduction histidine kinase | SAMN05444000_1133 | Not Available | Negative | 2407247 - 2408635 | 50656.7 |
| pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (e3) component | SAMN05444000_1134 | Not Available | Negative | 2408655 - 2410073 | 50587.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
