Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dipeptide transport system permease protein | SAMN05444000_112114 | Not Available | Negative | 2384929 - 2385825 | 32511.2 |
| dipeptide transport system permease protein | SAMN05444000_112115 | Not Available | Negative | 2385825 - 2386883 | 38878.6 |
| xaa-pro dipeptidase | SAMN05444000_112116 | Not Available | Negative | 2386832 - 2387926 | 39761.5 |
| dipeptide transport system substrate-binding protein | SAMN05444000_112117 | Not Available | Negative | 2387997 - 2389583 | 57816.1 |
| hypothetical protein | SAMN05444000_112118 | Not Available | Positive | 2389803 - 2389970 | 6312.42 |
| trypsin | SAMN05444000_112119 | Not Available | Positive | 2389909 - 2390604 | 24601.6 |
| membrane fusion protein, adhesin transport system | SAMN05444000_112120 | Not Available | Negative | 2390616 - 2391785 | 43710.3 |
| atp-binding cassette, subfamily c, lapb | SAMN05444000_112121 | Not Available | Negative | 2391788 - 2394067 | 82813.5 |
| outer membrane protein, adhesin transport system | SAMN05444000_112122 | Not Available | Negative | 2394085 - 2395401 | 47282.9 |
| hypothetical protein | SAMN05444000_112123 | Not Available | Negative | 2395490 - 2396527 | 35977.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
