Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitric oxide reductase, norb subunit apoprotein | SAMN05444000_11294 | Not Available | Negative | 2364168 - 2365532 | 51303.7 |
| nitric oxide reductase, norc subunit apoprotein | SAMN05444000_11295 | Not Available | Negative | 2365545 - 2365997 | 17241.5 |
| uncharacterized protein involved in response to no | SAMN05444000_11296 | Not Available | Negative | 2366180 - 2367361 | 42524.3 |
| dissimilatory nitrite reductase (no-forming), cytochrome cd1 type apoprotein | SAMN05444000_11297 | Not Available | Positive | 2367633 - 2369309 | 61839.9 |
| tetraheme cytochrome c subunit of nitrate or tmao reductase | SAMN05444000_11298 | Not Available | Positive | 2369497 - 2371287 | 64617.1 |
| plastocyanin | SAMN05444000_11299 | Not Available | Positive | 2371356 - 2371775 | 15313.2 |
| uroporphyrin-iii c-methyltransferase | SAMN05444000_112100 | Not Available | Positive | 2372007 - 2372774 | 27087.2 |
| cytochrome c55x | SAMN05444000_112101 | Not Available | Positive | 2372767 - 2373096 | 11797.1 |
| protein nirf | SAMN05444000_112102 | Not Available | Positive | 2373093 - 2374238 | 41418.3 |
| transcriptional regulator, asnc family | SAMN05444000_112103 | Not Available | Positive | 2374242 - 2375240 | 36453.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
