Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cu-processing system atp-binding protein | SAMN05444000_11274 | Not Available | Negative | 2344234 - 2345127 | 31490.3 |
| nitrous oxidase accessory protein | SAMN05444000_11275 | Not Available | Negative | 2345117 - 2346376 | 45439.1 |
| nitrous oxide reductase apoprotein | SAMN05444000_11276 | Not Available | Negative | 2346388 - 2348292 | 69995.5 |
| nosr/niri family transcriptional regulator, nitrous oxide reductase regulator | SAMN05444000_11277 | Not Available | Negative | 2348314 - 2350488 | 79794.9 |
| protein of unknown function | SAMN05444000_11278 | Not Available | Negative | 2350479 - 2350967 | 17651.8 |
| 4-hydroxy-3-polyprenylbenzoate decarboxylase | SAMN05444000_11279 | Not Available | Negative | 2351088 - 2351672 | 20386.1 |
| 3-octaprenyl-4hydroxybenzoate decarboxylase | SAMN05444000_11280 | Not Available | Negative | 2351669 - 2353174 | 55265.6 |
| predicted lipid carrier protein yhbt, contains scp2 domain | SAMN05444000_11281 | Not Available | Positive | 2353315 - 2353860 | 19981.2 |
| putative protease | SAMN05444000_11282 | Not Available | Positive | 2353854 - 2354837 | 34558.2 |
| collagenase-like protease, prtc family | SAMN05444000_11283 | Not Available | Positive | 2354843 - 2355757 | 32469.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
