Shimia gijangensis

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia gijangensis is a Gram-negative bacterium characterized by a single replicon in its genomic structure. The complete genome of Shimia gijangensis is cataloged under the accession number FQZQ00000000.1. This classification as a Gram-negative organism indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of this group of bacteria. The presence of a single replicon suggests a streamlined genomic organization, which can influence aspects of its physiology and replication. Such bacteria often exhibit unique metabolic pathways and ecological roles, which can be significant in various environments. Understanding the traits of Shimia gijangensis may provide insights into its ecological niche and potential applications in biotechnology or environmental microbiology. Further studies could explore its interactions within microbial communities and its role in biogeochemical cycles, thereby contributing to a broader understanding of microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia gijangensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudopelagicola gijangensis strain DSM 100564 genome assembly,

Gene Summary

Adenine Count

920331 bp

Thymine Count

925384 bp

Guanine Count

1137401 bp

Cytosine Count

1111454 bp

Genome Length

4094570 bp

Protein-coding Genes

3992 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cu-processing system atp-binding proteinSAMN05444000_11274Not AvailableNegative2344234 - 234512731490.3
nitrous oxidase accessory proteinSAMN05444000_11275Not AvailableNegative2345117 - 234637645439.1
nitrous oxide reductase apoproteinSAMN05444000_11276Not AvailableNegative2346388 - 234829269995.5
nosr/niri family transcriptional regulator, nitrous oxide reductase regulatorSAMN05444000_11277Not AvailableNegative2348314 - 235048879794.9
protein of unknown functionSAMN05444000_11278Not AvailableNegative2350479 - 235096717651.8
4-hydroxy-3-polyprenylbenzoate decarboxylaseSAMN05444000_11279Not AvailableNegative2351088 - 235167220386.1
3-octaprenyl-4hydroxybenzoate decarboxylaseSAMN05444000_11280Not AvailableNegative2351669 - 235317455265.6
predicted lipid carrier protein yhbt, contains scp2 domainSAMN05444000_11281Not AvailablePositive2353315 - 235386019981.2
putative proteaseSAMN05444000_11282Not AvailablePositive2353854 - 235483734558.2
collagenase-like protease, prtc familySAMN05444000_11283Not AvailablePositive2354843 - 235575732469.9

Displaying genes 2351 – 2360 of 4053 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.