Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted membrane protein | SAMN05444000_11233 | Not Available | Negative | 2306839 - 2307042 | 7306.36 |
| helix-turn-helix | SAMN05444000_11234 | Not Available | Positive | 2307150 - 2308007 | 31712.1 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05444000_11235 | Not Available | Negative | 2308076 - 2308837 | 26628.8 |
| carnitine 3-dehydrogenase | SAMN05444000_11236 | Not Available | Negative | 2308834 - 2310306 | 54166.8 |
| uncharacterized conserved protein, duf849 family | SAMN05444000_11237 | Not Available | Negative | 2310419 - 2311336 | 32549.3 |
| transcriptional regulator, arac family with amidase-like domain | SAMN05444000_11238 | Not Available | Positive | 2311414 - 2312394 | 35458.6 |
| adenosylcobyric acid synthase (glutamine-hydrolysing) | SAMN05444000_11239 | Not Available | Negative | 2312436 - 2313884 | 51187.2 |
| conserved hypothetical protein | SAMN05444000_11240 | Not Available | Negative | 2313978 - 2314322 | 12268.7 |
| conserved hypothetical protein | SAMN05444000_11241 | Not Available | Negative | 2314319 - 2314663 | 12326.9 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | SAMN05444000_11242 | Not Available | Negative | 2314797 - 2315411 | 22965.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
