Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator receiver modulated diguanylate cyclase | SAMN05444000_11223 | Not Available | Positive | 2300113 - 2301537 | 52186.2 |
| heavy-metal resistance | SAMN05444000_11224 | Not Available | Negative | 2301646 - 2302152 | 19055.8 |
| hypothetical protein | SAMN05444000_11225 | Not Available | Negative | 2302158 - 2302502 | 12014.3 |
| rna polymerase, sigma subunit, ecf family | SAMN05444000_11226 | Not Available | Negative | 2302522 - 2303100 | 21314.3 |
| ef hand | SAMN05444000_11227 | Not Available | Negative | 2303187 - 2303675 | 17765.2 |
| uncharacterized conserved protein, duf983 family | SAMN05444000_11228 | Not Available | Positive | 2303875 - 2304267 | 14550.0 |
| 8-oxo-dgtp pyrophosphatase mutt, nudix family | SAMN05444000_11229 | Not Available | Positive | 2304290 - 2304994 | 26281.9 |
| eama-like transporter family protein | SAMN05444000_11230 | Not Available | Negative | 2305016 - 2305573 | 19675.8 |
| hypothetical protein | SAMN05444000_11231 | Not Available | Negative | 2305591 - 2305917 | 11449.1 |
| fatty acid desaturase | SAMN05444000_11232 | Not Available | Negative | 2305938 - 2306846 | 35298.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
