Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phospholipid/cholesterol/gamma-hch transport system atp-binding protein | SAMN05444000_111124 | Not Available | Negative | 2268717 - 2269463 | 26525.2 |
| phospholipid/cholesterol/gamma-hch transport system permease protein | SAMN05444000_111125 | Not Available | Negative | 2269460 - 2270245 | 27171.8 |
| alanine racemase | SAMN05444000_111126 | Not Available | Negative | 2270242 - 2271303 | 37888.3 |
| catechol 2,3-dioxygenase | SAMN05444000_111127 | Not Available | Negative | 2271345 - 2271749 | 14797.5 |
| replicative dna helicase | SAMN05444000_111128 | Not Available | Negative | 2271749 - 2273236 | 54167.6 |
| orotate phosphoribosyltransferase | SAMN05444000_111129 | Not Available | Negative | 2273448 - 2274128 | 24954.8 |
| dihydroorotase | SAMN05444000_111130 | Not Available | Negative | 2274204 - 2275244 | 37293.5 |
| hypothetical protein | SAMN05444000_111131 | Not Available | Negative | 2275304 - 2276248 | 35494.3 |
| primase c terminal 2 (prict-2) | SAMN05444000_1121 | Not Available | Negative | 2276792 - 2279005 | 81856.5 |
| hypothetical protein | SAMN05444000_1122 | Not Available | Negative | 2279115 - 2279420 | 11965.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
