Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadp-dependent 3-hydroxy acid dehydrogenase ydfg | SAMN05444000_111114 | Not Available | Negative | 2261397 - 2262050 | 23057.7 |
| hypothetical protein | SAMN05444000_111115 | Not Available | Negative | 2262164 - 2262418 | 8724.72 |
| hypothetical protein | SAMN05444000_111116 | Not Available | Negative | 2262549 - 2262959 | 15318.4 |
| amidophosphoribosyltransferase | SAMN05444000_111117 | Not Available | Negative | 2262959 - 2264425 | 53469.3 |
| hypothetical protein | SAMN05444000_111118 | Not Available | Negative | 2264753 - 2264950 | 7198.49 |
| hypothetical protein | SAMN05444000_111119 | Not Available | Positive | 2265147 - 2265275 | 4672.78 |
| membrane protein required for colicin v production | SAMN05444000_111120 | Not Available | Negative | 2265686 - 2266237 | 19491.0 |
| dna repair protein rada/sms | SAMN05444000_111121 | Not Available | Negative | 2266281 - 2267648 | 47487.0 |
| paraquat-inducible protein a | SAMN05444000_111122 | Not Available | Negative | 2267666 - 2268094 | 15546.9 |
| hypothetical protein | SAMN05444000_111123 | Not Available | Negative | 2268240 - 2268629 | 13736.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
