Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoglycolate phosphatase | SAMN05444000_11164 | Not Available | Positive | 2212560 - 2213231 | 23507.2 |
| 2-methylcitrate dehydratase prpd | SAMN05444000_11165 | Not Available | Negative | 2213204 - 2214514 | 46952.5 |
| dtdp-4-amino-4,6-dideoxygalactose transaminase | SAMN05444000_11166 | Not Available | Positive | 2214665 - 2215858 | 43554.5 |
| isovaleryl-coa dehydrogenase | SAMN05444000_11167 | Not Available | Positive | 2216119 - 2217282 | 42139.6 |
| protein of unknown function | SAMN05444000_11168 | Not Available | Positive | 2217333 - 2217836 | 18033.3 |
| 3-methylcrotonyl-coa carboxylase beta subunit | SAMN05444000_11169 | Not Available | Positive | 2217855 - 2219462 | 57210.6 |
| 3-methylcrotonoyl-coa carboxylase, alpha subunit | SAMN05444000_11170 | Not Available | Positive | 2219535 - 2221487 | 68572.9 |
| glutathione s-transferase | SAMN05444000_11171 | Not Available | Positive | 2221484 - 2222143 | 24743.7 |
| hydroxymethylglutaryl-coa lyase | SAMN05444000_11172 | Not Available | Positive | 2222136 - 2222993 | 29710.5 |
| methylglutaconyl-coa hydratase | SAMN05444000_11173 | Not Available | Positive | 2223051 - 2223836 | 27839.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
