Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein-s-isoprenylcysteine o-methyltransferase ste14 | SAMN05444000_11154 | Not Available | Positive | 2201441 - 2201893 | 16895.1 |
| nad(p) transhydrogenase subunit alpha | SAMN05444000_11155 | Not Available | Positive | 2202029 - 2203600 | 55554.6 |
| nad(p) transhydrogenase subunit beta | SAMN05444000_11156 | Not Available | Positive | 2203614 - 2205071 | 50640.2 |
| 3-deoxy-d-manno-octulosonic-acid transferase | SAMN05444000_11157 | Not Available | Negative | 2205243 - 2206520 | 45806.7 |
| cyclic pyranopterin monophosphate synthase subunit moaa | SAMN05444000_11158 | Not Available | Negative | 2206520 - 2207527 | 38192.1 |
| hypothetical protein | SAMN05444000_11159 | Not Available | Positive | 2207591 - 2208019 | 14476.7 |
| 3-methyladenine dna glycosylase alkd | SAMN05444000_11160 | Not Available | Negative | 2208021 - 2208698 | 25990.0 |
| pyridoxamine 5'-phosphate oxidase | SAMN05444000_11161 | Not Available | Negative | 2208688 - 2209245 | 20694.4 |
| glucosamine--fructose-6-phosphate aminotransferase (isomerizing) | SAMN05444000_11162 | Not Available | Negative | 2209249 - 2211072 | 65381.5 |
| udp-n-acetylglucosamine pyrophosphorylase /glucosamine-1-phosphate n-acetyltransferase | SAMN05444000_11163 | Not Available | Negative | 2211072 - 2212427 | 47813.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
