Shimia gijangensis

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia gijangensis is a Gram-negative bacterium characterized by a single replicon in its genomic structure. The complete genome of Shimia gijangensis is cataloged under the accession number FQZQ00000000.1. This classification as a Gram-negative organism indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of this group of bacteria. The presence of a single replicon suggests a streamlined genomic organization, which can influence aspects of its physiology and replication. Such bacteria often exhibit unique metabolic pathways and ecological roles, which can be significant in various environments. Understanding the traits of Shimia gijangensis may provide insights into its ecological niche and potential applications in biotechnology or environmental microbiology. Further studies could explore its interactions within microbial communities and its role in biogeochemical cycles, thereby contributing to a broader understanding of microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia gijangensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudopelagicola gijangensis strain DSM 100564 genome assembly,

Gene Summary

Adenine Count

920331 bp

Thymine Count

925384 bp

Guanine Count

1137401 bp

Cytosine Count

1111454 bp

Genome Length

4094570 bp

Protein-coding Genes

3992 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
malate synthaseSAMN05444000_11144Not AvailablePositive2189969 - 219211678364.4
conserved hypothetical proteinSAMN05444000_11145Not AvailableNegative2192031 - 219257619402.4
uncharacterized conserved protein glcg, duf336 familySAMN05444000_11146Not AvailablePositive2192755 - 219321915871.3
putative glutamine amidotransferaseSAMN05444000_11147Not AvailablePositive2193291 - 219407027978.1
ca2+-binding protein, rtx toxin-relatedSAMN05444000_11148Not AvailableNegative2194062 - 219651285378.8
tryptophan 2,3-dioxygenaseSAMN05444000_11149Not AvailableNegative2196742 - 219757532190.2
kynureninaseSAMN05444000_11150Not AvailableNegative2197722 - 219891543480.9
predicted dna-binding protein, mmcq/yjbr familySAMN05444000_11151Not AvailableNegative2199023 - 219939713721.5
nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase familySAMN05444000_11152Not AvailableNegative2199407 - 220015926287.8
glyoxylase, beta-lactamase superfamily iiSAMN05444000_11153Not AvailablePositive2200308 - 220126134840.0

Displaying genes 2191 – 2200 of 4053 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.