Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05444000_101193 | Not Available | Negative | 207799 - 209556 | 64338.2 |
| ribosome-associated protein | SAMN05444000_101194 | Not Available | Positive | 209874 - 210206 | 12311.8 |
| 23s rrna (pseudouridine1915-n3)-methyltransferase | SAMN05444000_101195 | Not Available | Positive | 210240 - 210716 | 16899.5 |
| uncharacterized membrane protein | SAMN05444000_101196 | Not Available | Negative | 210779 - 211489 | 26177.2 |
| glycolate oxidase | SAMN05444000_101197 | Not Available | Positive | 211578 - 213017 | 51161.5 |
| glycolate oxidase fad binding subunit | SAMN05444000_101198 | Not Available | Positive | 213069 - 214214 | 39902.1 |
| glycolate oxidase iron-sulfur subunit | SAMN05444000_101199 | Not Available | Positive | 214218 - 215540 | 48487.3 |
| trypsin | SAMN05444000_101200 | Not Available | Positive | 215635 - 216435 | 29033.4 |
| protease ydgd | SAMN05444000_101201 | Not Available | Positive | 216432 - 217262 | 29880.2 |
| molecular chaperone ibpa | SAMN05444000_101202 | Not Available | Positive | 217400 - 217867 | 17378.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
