Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cobaltochelatase cobs subunit | SAMN05444000_11124 | Not Available | Negative | 2170758 - 2171744 | 36927.8 |
| peptide-methionine (r)-s-oxide reductase | SAMN05444000_11125 | Not Available | Positive | 2171944 - 2172420 | 17448.8 |
| dna-binding transcriptional regulator, lysr family | SAMN05444000_11126 | Not Available | Positive | 2172691 - 2173575 | 33051.6 |
| uncharacterized protein ycsi, upf0317 family | SAMN05444000_11127 | Not Available | Positive | 2173670 - 2174497 | 29294.9 |
| trap-type c4-dicarboxylate transport system, substrate-binding protein | SAMN05444000_11128 | Not Available | Positive | 2174520 - 2175551 | 36317.8 |
| trap-type c4-dicarboxylate transport system, small permease component | SAMN05444000_11129 | Not Available | Positive | 2175577 - 2176125 | 19981.1 |
| trap transporter, dctm subunit | SAMN05444000_11130 | Not Available | Positive | 2176122 - 2177405 | 44911.1 |
| upf0271 protein | SAMN05444000_11131 | Not Available | Positive | 2177506 - 2178267 | 26715.1 |
| inhibitor of kina | SAMN05444000_11132 | Not Available | Positive | 2178276 - 2178965 | 24801.7 |
| allophanate hydrolase | SAMN05444000_11133 | Not Available | Positive | 2178958 - 2179959 | 35483.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
