Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05444000_1114 | Not Available | Negative | 2146846 - 2148033 | 42758.2 |
| sulfotransferase domain-containing protein | SAMN05444000_1115 | Not Available | Negative | 2148132 - 2149007 | 32871.4 |
| cell division protein ftsw | SAMN05444000_1116 | Not Available | Positive | 2149251 - 2150417 | 41877.3 |
| udp-n-acetylglucosamine--n-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferase | SAMN05444000_1117 | Not Available | Positive | 2150414 - 2151511 | 38504.6 |
| udp-n-acetylmuramate--l-alanine ligase | SAMN05444000_1118 | Not Available | Positive | 2151514 - 2152908 | 49834.2 |
| amino acid/polyamine/organocation transporter, apc superfamily | SAMN05444000_1119 | Not Available | Positive | 2153012 - 2154199 | 40549.9 |
| protein of unknown function | SAMN05444000_11110 | Not Available | Positive | 2154196 - 2154450 | 9525.11 |
| protein of unknown function | SAMN05444000_11111 | Not Available | Positive | 2154447 - 2154698 | 9951.71 |
| udp-n-acetylmuramate dehydrogenase | SAMN05444000_11112 | Not Available | Positive | 2154759 - 2155682 | 32811.9 |
| d-alanine-d-alanine ligase | SAMN05444000_11113 | Not Available | Positive | 2155769 - 2156683 | 33034.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
