Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitrogen fixation protein fixh | SAMN05444000_110124 | Not Available | Positive | 2119507 - 2119965 | 16338.7 |
| cu2+-exporting atpase | SAMN05444000_110125 | Not Available | Positive | 2119969 - 2122158 | 76396.2 |
| cytochrome oxidase maturation protein, cbb3-type | SAMN05444000_110126 | Not Available | Positive | 2122166 - 2122324 | 5933.12 |
| fumarylpyruvate hydrolase | SAMN05444000_110127 | Not Available | Negative | 2122385 - 2123074 | 24492.2 |
| d-alanyl-d-alanine carboxypeptidase | SAMN05444000_110128 | Not Available | Negative | 2123114 - 2124478 | 48909.8 |
| putative hydrolase of the had superfamily | SAMN05444000_110129 | Not Available | Negative | 2124682 - 2125383 | 26187.4 |
| atp-dependent clp protease adaptor protein clps | SAMN05444000_110130 | Not Available | Positive | 2125480 - 2125818 | 12753.6 |
| 16s rrna (guanine1207-n2)-methyltransferase | SAMN05444000_110131 | Not Available | Positive | 2125850 - 2126833 | 35884.6 |
| 7-alpha-hydroxysteroid dehydrogenase | SAMN05444000_110132 | Not Available | Positive | 2126874 - 2127674 | 28304.7 |
| coproporphyrinogen oxidase | SAMN05444000_110133 | Not Available | Positive | 2127747 - 2128640 | 33235.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
