Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| microcin c transport system permease protein | SAMN05444000_110114 | Not Available | Positive | 2108035 - 2109141 | 41385.6 |
| microcin c transport system atp-binding protein | SAMN05444000_110115 | Not Available | Positive | 2109138 - 2110721 | 57383.8 |
| oxygen-independent coproporphyrinogen-3 oxidase | SAMN05444000_110116 | Not Available | Negative | 2110824 - 2112179 | 49879.3 |
| crp/fnr family transcriptional regulator, anaerobic regulatory protein | SAMN05444000_110117 | Not Available | Positive | 2112244 - 2112990 | 27451.2 |
| nucleotide-binding universal stress protein, uspa family | SAMN05444000_110118 | Not Available | Negative | 2113061 - 2113900 | 29798.7 |
| cytochrome c oxidase cbb3-type subunit 1 | SAMN05444000_110119 | Not Available | Positive | 2114109 - 2115710 | 59492.3 |
| cytochrome c oxidase cbb3-type subunit 2 | SAMN05444000_110120 | Not Available | Positive | 2115724 - 2116452 | 27307.6 |
| cytochrome c oxidase cbb3-type subunit 4 | SAMN05444000_110121 | Not Available | Positive | 2116465 - 2116650 | 7256.7 |
| cytochrome c oxidase cbb3-type subunit 3 | SAMN05444000_110122 | Not Available | Positive | 2116647 - 2117513 | 30983.7 |
| cytochrome c oxidase accessory protein fixg | SAMN05444000_110123 | Not Available | Positive | 2118071 - 2119507 | 54507.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
