Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05444000_110103 | Not Available | Positive | 2097026 - 2097862 | 29882.3 |
| dual specificity phosphatase, catalytic domain | SAMN05444000_110104 | Not Available | Positive | 2097859 - 2098338 | 17167.8 |
| ribosome biogenesis gtpase | SAMN05444000_110105 | Not Available | Negative | 2098342 - 2099400 | 38710.6 |
| 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase | SAMN05444000_110107 | Not Available | Negative | 2099661 - 2101547 | 68313.1 |
| nad+ diphosphatase | SAMN05444000_110108 | Not Available | Positive | 2101757 - 2102725 | 35510.5 |
| hypothetical protein | SAMN05444000_110109 | Not Available | Positive | 2102772 - 2103239 | 17823.6 |
| prephenate dehydratase | SAMN05444000_110110 | Not Available | Negative | 2103246 - 2104082 | 30521.4 |
| cytochrome c | SAMN05444000_110111 | Not Available | Positive | 2104203 - 2104733 | 18407.7 |
| microcin c transport system substrate-binding protein | SAMN05444000_110112 | Not Available | Positive | 2104985 - 2106919 | 72760.7 |
| microcin c transport system permease protein | SAMN05444000_110113 | Not Available | Positive | 2106927 - 2108030 | 40257.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
