Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome b561 | SAMN05444000_11062 | Not Available | Positive | 2067041 - 2067580 | 19717.6 |
| uncharacterized membrane protein | SAMN05444000_11063 | Not Available | Positive | 2067659 - 2068516 | 29935.7 |
| chromosome partitioning protein | SAMN05444000_11064 | Not Available | Negative | 2068528 - 2069337 | 29882.3 |
| choline-sulfatase | SAMN05444000_11065 | Not Available | Positive | 2069526 - 2070983 | 53442.6 |
| ribosomal large subunit pseudouridine synthase e | SAMN05444000_11066 | Not Available | Negative | 2071059 - 2071652 | 22391.9 |
| cystathionine gamma-synthase | SAMN05444000_11067 | Not Available | Positive | 2071757 - 2072899 | 40356.7 |
| sugar phosphate permease | SAMN05444000_11068 | Not Available | Positive | 2072969 - 2074189 | 43085.0 |
| formate/nitrite transporter | SAMN05444000_11069 | Not Available | Negative | 2074229 - 2075014 | 27142.8 |
| lsu ribosomal protein l31p | SAMN05444000_11070 | Not Available | Negative | 2075174 - 2075395 | 8215.73 |
| lsu ribosomal protein l19p | SAMN05444000_11071 | Not Available | Negative | 2075407 - 2075781 | 13798.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
