Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05444000_11052 | Not Available | Negative | 2057657 - 2058859 | 41496.5 |
| maleylacetoacetate isomerase | SAMN05444000_11053 | Not Available | Negative | 2059115 - 2059753 | 23267.8 |
| catechol 2,3-dioxygenase | SAMN05444000_11054 | Not Available | Negative | 2059834 - 2060373 | 20897.9 |
| protein of unknown function | SAMN05444000_11055 | Not Available | Negative | 2060379 - 2060582 | 7034.31 |
| 3-(3-hydroxy-phenyl)propionate hydroxylase | SAMN05444000_11056 | Not Available | Negative | 2060588 - 2062198 | 60069.2 |
| glyoxylase, beta-lactamase superfamily ii | SAMN05444000_11057 | Not Available | Negative | 2062352 - 2063302 | 34638.6 |
| dihydrofolate reductase | SAMN05444000_11058 | Not Available | Negative | 2063307 - 2063843 | 19078.6 |
| fumarylacetoacetate hydrolase | SAMN05444000_11059 | Not Available | Negative | 2063848 - 2065110 | 45494.8 |
| homogentisate 1,2-dioxygenase | SAMN05444000_11060 | Not Available | Negative | 2065122 - 2066483 | 50762.0 |
| transcriptional regulator, marr family | SAMN05444000_11061 | Not Available | Positive | 2066563 - 2067000 | 16879.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
