Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, paax family | SAMN05444000_11032 | Not Available | Negative | 2038403 - 2039206 | 30102.9 |
| oxepin-coa hydrolase / 3-oxo-5,6-dehydrosuberyl-coa semialdehyde dehydrogenase | SAMN05444000_11033 | Not Available | Negative | 2039285 - 2041315 | 73177.4 |
| hypothetical protein | SAMN05444000_11034 | Not Available | Negative | 2041440 - 2042627 | 44500.4 |
| trap transporter, dctm subunit | SAMN05444000_11035 | Not Available | Negative | 2042627 - 2043979 | 47701.1 |
| trap-type c4-dicarboxylate transport system, small permease component | SAMN05444000_11036 | Not Available | Negative | 2043976 - 2044482 | 18982.0 |
| trap-type c4-dicarboxylate transport system, substrate-binding protein | SAMN05444000_11037 | Not Available | Negative | 2044571 - 2045593 | 35410.2 |
| short chain enoyl-coa hydratase /3-hydroxyacyl-coa dehydrogenase | SAMN05444000_11038 | Not Available | Negative | 2045671 - 2047773 | 75913.3 |
| enoyl-coa hydratase | SAMN05444000_11039 | Not Available | Positive | 2047809 - 2048594 | 27862.1 |
| acyl-coa thioesterase | SAMN05444000_11040 | Not Available | Positive | 2048597 - 2049022 | 15073.8 |
| phenylacetate-coa ligase | SAMN05444000_11041 | Not Available | Positive | 2049040 - 2050350 | 48200.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
