Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfoacetaldehyde dehydrogenase | SAMN05444000_109140 | Not Available | Negative | 1999252 - 2000655 | 49617.0 |
| tripartite-type tricarboxylate transporter, receptor component tctc | SAMN05444000_109141 | Not Available | Negative | 2000724 - 2001683 | 33363.2 |
| tripartite tricarboxylate transporter tctb family protein | SAMN05444000_109142 | Not Available | Negative | 2001725 - 2002180 | 17005.2 |
| putative tricarboxylic transport membrane protein | SAMN05444000_109143 | Not Available | Negative | 2002177 - 2003688 | 52236.2 |
| transcriptional regulator, laci family | SAMN05444000_109144 | Not Available | Positive | 2003816 - 2004850 | 37825.5 |
| hypothetical protein | SAMN05444000_109145 | Not Available | Negative | 2005162 - 2005467 | 11105.3 |
| hypothetical protein | SAMN05444000_109146 | Not Available | Negative | 2005506 - 2005658 | 5356.36 |
| hypothetical protein | SAMN05444000_109147 | Not Available | Negative | 2005672 - 2005782 | 3997.73 |
| nuclease homologue | SAMN05444000_109148 | Not Available | Negative | 2005795 - 2006400 | 22366.8 |
| 16s rrna (guanine1516-n2)-methyltransferase | SAMN05444000_1101 | Not Available | Positive | 2007031 - 2007531 | 18169.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
