Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-dehydro-3-deoxyphosphogluconate aldolase / (4s)-4-hydroxy-2-oxoglutarate aldolase | SAMN05444000_109130 | Not Available | Negative | 1988676 - 1989326 | 21942.8 |
| 6-phosphogluconate dehydratase | SAMN05444000_109131 | Not Available | Negative | 1989330 - 1991138 | 63169.8 |
| glucose-6-phosphate 1-dehydrogenase | SAMN05444000_109132 | Not Available | Negative | 1991173 - 1992621 | 54010.6 |
| hypothetical protein | SAMN05444000_109133 | Not Available | Positive | 1992649 - 1992894 | 8699.45 |
| 2,3-dihydroxybiphenyl 1,2-dioxygenase | SAMN05444000_109134 | Not Available | Positive | 1993152 - 1994123 | 36040.4 |
| 3-(3-hydroxy-phenyl)propionate hydroxylase | SAMN05444000_109135 | Not Available | Positive | 1994138 - 1995646 | 55087.2 |
| fumarylacetoacetate (faa) hydrolase | SAMN05444000_109136 | Not Available | Positive | 1995643 - 1996623 | 35066.8 |
| transcriptional regulator, iclr family | SAMN05444000_109137 | Not Available | Positive | 1996672 - 1997472 | 29435.2 |
| hypothetical protein | SAMN05444000_109138 | Not Available | Positive | 1997591 - 1997899 | 10965.2 |
| acyl-coa synthetase (amp-forming)/amp-acid ligase ii | SAMN05444000_109139 | Not Available | Negative | 1997759 - 1999255 | 53320.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
