Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipopolysaccharide export lptbfgc system, permease protein lptf | SAMN05444000_109110 | Not Available | Positive | 1967578 - 1968687 | 39915.9 |
| lipopolysaccharide export lptbfgc system, permease protein lptf | SAMN05444000_109111 | Not Available | Positive | 1968684 - 1969814 | 41010.2 |
| choline kinase | SAMN05444000_109112 | Not Available | Negative | 1969811 - 1970560 | 27433.5 |
| phosphatidylinositol alpha-mannosyltransferase | SAMN05444000_109113 | Not Available | Positive | 1970651 - 1971772 | 40844.3 |
| xylulokinase | SAMN05444000_109114 | Not Available | Positive | 1971855 - 1973396 | 55329.1 |
| cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase/archaetidylinositol phosphate synthase | SAMN05444000_109115 | Not Available | Positive | 1973408 - 1974025 | 22416.5 |
| frag1/dram/sfk1 family protein | SAMN05444000_109116 | Not Available | Negative | 1974010 - 1974771 | 28417.3 |
| putative atp-binding cassette transporter | SAMN05444000_109117 | Not Available | Negative | 1974768 - 1976483 | 62531.4 |
| hypothetical protein | SAMN05444000_109118 | Not Available | Negative | 1976540 - 1977496 | 36355.8 |
| putative n6-adenine-specific dna methylase | SAMN05444000_109119 | Not Available | Negative | 1977598 - 1978713 | 40285.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
