Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted arabinose efflux permease, mfs family | SAMN05444000_10980 | Not Available | Negative | 1936044 - 1937288 | 43714.4 |
| beta-methylmalyl-coa/l-malyl-coa lyase | SAMN05444000_10981 | Not Available | Positive | 1937463 - 1938422 | 34424.9 |
| hypothetical protein | SAMN05444000_10982 | Not Available | Positive | 1938493 - 1939119 | 22179.8 |
| threonine/homoserine/homoserine lactone efflux protein | SAMN05444000_10983 | Not Available | Positive | 1939116 - 1939712 | 21541.1 |
| acetyl-coa carboxylase carboxyltransferase subunit alpha | SAMN05444000_10984 | Not Available | Positive | 1939833 - 1940795 | 34886.8 |
| predicted arabinose efflux permease, mfs family | SAMN05444000_10985 | Not Available | Positive | 1940833 - 1942164 | 47996.2 |
| transcriptional regulator, gntr family | SAMN05444000_10986 | Not Available | Negative | 1942177 - 1942749 | 21044.8 |
| hypothetical protein | SAMN05444000_10987 | Not Available | Negative | 1942859 - 1943551 | 26273.7 |
| tigr02300 family protein | SAMN05444000_10988 | Not Available | Positive | 1943662 - 1943985 | 11640.0 |
| Trna-ala | Not Available | Not Available | Positive | 1944071 - 1944146 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
