Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyruvate kinase | SAMN05444000_10970 | Not Available | Negative | 1928019 - 1929458 | 51438.9 |
| predicted n-formylglutamate amidohydrolase | SAMN05444000_10971 | Not Available | Positive | 1929576 - 1930319 | 27551.6 |
| 5-carboxymethyl-2-hydroxymuconate isomerase | SAMN05444000_10972 | Not Available | Positive | 1930323 - 1930670 | 12370.8 |
| hypothetical protein | SAMN05444000_10973 | Not Available | Positive | 1930800 - 1931042 | 9187.45 |
| hypothetical protein | SAMN05444000_10974 | Not Available | Positive | 1931148 - 1931471 | 12412.6 |
| uncaracterized surface protein containing fasciclin (fas1) repeats | SAMN05444000_10975 | Not Available | Negative | 1931634 - 1932155 | 17816.2 |
| transcriptional regulator, xre family with cupin sensor | SAMN05444000_10976 | Not Available | Positive | 1932322 - 1932909 | 21445.9 |
| d-alanine transaminase | SAMN05444000_10977 | Not Available | Negative | 1932982 - 1933845 | 31801.2 |
| l-alanine-dl-glutamate epimerase | SAMN05444000_10978 | Not Available | Negative | 1933856 - 1934818 | 33958.9 |
| uncharacterized conserved protein, nad-dependent epimerase/dehydratase family | SAMN05444000_10979 | Not Available | Negative | 1934892 - 1935899 | 35818.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
