Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05444000_101163 | Not Available | Positive | 170588 - 170959 | 13030.5 |
| protein of unknown function | SAMN05444000_101164 | Not Available | Positive | 171053 - 171379 | 11976.2 |
| saccharopine dehydrogenase (nadp+, l-glutamate forming) | SAMN05444000_101165 | Not Available | Negative | 171451 - 172593 | 42174.1 |
| saccharopine dehydrogenase (nad+, l-lysine-forming) | SAMN05444000_101166 | Not Available | Negative | 172607 - 173662 | 38000.2 |
| dna polymerase i | SAMN05444000_101167 | Not Available | Positive | 173955 - 176765 | 102971.0 |
| hydroxypyruvate isomerase | SAMN05444000_101168 | Not Available | Negative | 176784 - 177539 | 27582.7 |
| eama-like transporter family protein | SAMN05444000_101169 | Not Available | Positive | 177753 - 178691 | 32073.9 |
| hypothetical protein | SAMN05444000_101170 | Not Available | Negative | 178688 - 179290 | 21798.9 |
| moxr-like atpase | SAMN05444000_101171 | Not Available | Positive | 179346 - 180353 | 36163.6 |
| protein of unknown function duf58 | SAMN05444000_101172 | Not Available | Positive | 180350 - 181222 | 32619.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
