Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pep-cterm protein-sorting domain-containing protein | SAMN05444000_10930 | Not Available | Negative | 1889764 - 1890732 | 34714.6 |
| hypothetical protein | SAMN05444000_10931 | Not Available | Negative | 1890808 - 1891293 | 17271.7 |
| s-formylglutathione hydrolase | SAMN05444000_10932 | Not Available | Negative | 1891268 - 1892101 | 30494.6 |
| hypothetical protein | SAMN05444000_10933 | Not Available | Negative | 1892185 - 1893114 | 32677.0 |
| rubrerythrin | SAMN05444000_10934 | Not Available | Negative | 1893169 - 1894143 | 35235.0 |
| transcriptional regulator, tetr family | SAMN05444000_10935 | Not Available | Positive | 1894264 - 1894881 | 23321.1 |
| s-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase | SAMN05444000_10936 | Not Available | Negative | 1894940 - 1896073 | 39995.2 |
| peptidase inhibitor i78 family protein | SAMN05444000_10937 | Not Available | Positive | 1896208 - 1896480 | 9747.85 |
| taurine-pyruvate aminotransferase | SAMN05444000_10938 | Not Available | Positive | 1896672 - 1898069 | 50904.7 |
| protein n-acetyltransferase, rimj/riml family | SAMN05444000_10939 | Not Available | Positive | 1898138 - 1898725 | 21835.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
